How to get gene expression value from Arrayexpress

ArrayExpress has a wonderful R package for data search, download and analysis but it doesn't always work in perfection. Therefore it always good to have an alternative to download the raw data/CEL and analyze it. This R script will simply take the accession number in command line argument and save the expression data in a file named as  Gene_expression.txt.
How to download expression data set from NCBI GEO HERE


We need the following R libraries to run the script
  • ArrayExpress 
  • aff


Rscript script_name accession_number


  • This script is written specifically for Arabidopsis data sets, therefore, you have to modify it as per your requirement. 


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