Perl Script 3: How to remove non amino acid characters from a multi fasta file
Question : I have been trying to remove non sequence data from a protein sequences fasta file. My input file is given where I am trying to remove digits and white space as I only need the accession number and sequence:
Answer : Considering that name of your FASTA sequence containing file is "input" and want to save your result into 'output.txt', you can use either of these PERL script. First of all save these PERL script separately and then run on you machine
PERL Script 1 :
PERL Script 2 :
Source : protocol-online
First of all, let me clear it that i am not a Bioinformatician. i am simple plant biology researcher who face problem in her daily research life and who bother to post solution of those problem on this webpage. That's it.
Labels: Perl Script