Free Web Tools for miRNA Analysis


Application name
Web address
miRBase
http://www.mirbase.org
smirnaDB
http://www.mirz.unibas.ch/cloningprofiles
miRNA Expression
http://www.microrna.org/microrna/getExprForm.do
miRNEYE
http://mirneye.tigem.it
S-MED//CC-MED
http://www.oncomir.umn.edu/SMED & http://www.oncomir.umn.edu/colon/basic_search.php
TargetScan
http://www.targetscan.org
DIANA-microT-CDS
http://www.microrna.gr/microT-CDS
microRNA.org
http://microrna.org
miRDB
http://www.mirdb.org
RNA22
http://cm.jefferson.edu/rna22v1.0-homo_sapiens
TargetMiner
http://www.isical.ac.in/~bioinfo_miu/targetminer20.htm
PicTar
http://pictar.mdc-berlin.de
DIANA-TarBase
http://www.microrna.gr/tarbase
miRTarBase
http://mirtarbase.mbc.nctu.edu.tw
miRecords
http://mirecords.biolead.org
StarBase
http://starbase.sysu.edu.cn
DIANA-miRPath
http://www.microrna.gr/miRPathv2
miTalos
http://mips.helmholtz-muenchen.de/mitalos
GeneTrail
http://genetrail.bioinf.uni-sb.de
miRGator
http://mirgator.kobic.re.kr
miR2Disease
http://www.mir2disease.org
HMDD
http://202.38.126.151/hmdd/mirna/md
PhenomiR
http://mips.helmholtz-muenchen.de/phenomir
miRenvironment
http://202.38.126.151/hmdd/tools/miren.html
wapRNA
http://waprna.big.ac.cn
DSAP
http://dsap.cgu.edu.tw
miRanalyzer
http://bioinfo2.ugr.es/miRanalyzer/miRanalyzer.php
miRCat
http://srna-tools.cmp.uea.ac.uk/animal/cgi-bin/srna-tools.cgi?rm=input_form&tool=mircat

Reference
Vlachos IS, Hatzigeorgiou AG. (2014) Online resources for miRNA analysis. Clin Biochem 46(10-11), 879-900.

Google Genomics : A New Way to Explore and Share Your Data

Google has recently launched a new Bioinformatic resource 'Google Genomics'. Google Genomics provides an application-programming interface 'to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure'.

New Features

  • Store: With Google Genomics API, you can store alignments and variant calls for one or several genomes.
  • Process: You can analyze you data in batch by running principal component analysis or Hardy-Weinberg equilibrium.
  • Explore: You can explore your data by slicing alignments and variants.
  • Share: You can directly share your genomic data with the person you want to
  • How to Use

  • Sign up/sign in for a Google Account.
  • Create a Genomics enabled project via the Google Developers Console.
  • After redirection to the Credentials tab, click Create new client ID
  • Select Installed application under Application type
  • Select Other under Installed application type
  • Click Create Client ID
  • Under Client ID for native application, Click Download JSON and rename the downloaded file to client_secrets.json.
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